// GW5adj.fe

// Schoen's GW surface (graphite-wurtzite)

// From data supplied by Alan Schoen, May 2, 2008

// Programmer: Ken Brakke, brakke@susqu.edu, http://www.susqu.edu

/* Commands:
   gogo - typical evolution
   showlayer - shows one plane layer
   showgprism - show one graphite labyrinth hexagonal prism
   showwprism - show one wurtzite labyrinth hexagonal prism
   transforms off - show just single fundamental region
   setcolor - to color one side yellow, as in my web page.
   To turn off showing all the edges in the graphics display,
      hit the "e" key in the graphics window.
*/

// parameters
parameter length1 =  0.5  


// Constraints for edges after conjugating, formulated so
parameter rhs1 = 0
parameter rhs2 = 0
parameter rhs3 = 0
parameter rhs4 = 0
parameter rhs5 = 0
parameter rhs6 = 0

constraint 1
formula: sqrt(3)*x - y = rhs1

constraint 2
formula: z = rhs2

constraint 3
formula: -sqrt(3)*x - y  = rhs3

constraint 4
formula:  y = rhs4

constraint 5
formula: z = rhs5

constraint 6
formula: -sqrt(3)*x - y = rhs6

// Transform generators 
view_transform_generators 6

// a: mirror in constraint 1, sqrt(3)*x - y = rhs1
-1/2 sqrt(3)/2 0 sqrt(3)/2*rhs1 
 sqrt(3)/2 1/2 0 -rhs1/2
 0  0 1 0
 0  0 0 1

// b: z = rhs2 mirror
 1 0 0 0
 0 1 0 0
 0 0 -1 2*rhs2
 0 0 0 1

// c: mirror in constraint 3, -sqrt(3)*x - y = rhs3
-1/2 -sqrt(3)/2 0 -sqrt(3)/2*rhs3 
 -sqrt(3)/2 1/2 0 -rhs3/2
 0  0 1 0
 0  0 0 1

// d: mirror about y = rhs4 
1 0 0 0
0 -1 0 2*rhs4
0 0 1 0
0 0 0 1
 
// e: z = rhs5 mirror
 1 0 0 0
 0 1 0 0
 0 0 -1 2*rhs5
 0 0 0 1

// f: mirror in constraint 3, -sqrt(3)*x - y = rhs6
-1/2 -sqrt(3)/2 0 -sqrt(3)/2*rhs6 
 -sqrt(3)/2 1/2 0 -rhs6/2
 0  0 1 0
 0  0 0 1

vertices
1  0 0 0 fixed
2  sqrt(3) -1 0 fixed
3  sqrt(3) -1 length1 fixed
4  sqrt(3)/2  -1.5 length1 fixed
5  sqrt(3)/2  .5  length1  fixed
6  sqrt(3)/2  .5  0  fixed

edges
1  1 2 fixed
2  2 3 fixed
3  3 4 fixed
4  4 5 fixed
5  5 6 fixed
6  6 1 fixed

faces
1   1 2 3 4 5 6

read

read "adjoint.cmd"

// adjointing command
adj := { 
         unfix vertices; unfix edges;
         adjoint; 
}

// evolution command
gg := { refine edge where valence == 1;
          g 20; r; g 20; u; V; g 20;
          r; g 20; u; V; u; V; g 20;
          conj_grad; g 20; u; V; u; V; g 20;
          r; refine edge where original==1 or original==4;
          if length1 > 2 then refine edge where original==2 or original==5;
          if length1 < .5 then refine edge where original==1 or original==4;
          g 20; u; V; g 20;
}

// to reposition and normalize surface after conjugating
frame := {

  // set constraints
  rhs1 := sqrt(3)*vertex[1].x - vertex[1].y;
  foreach edge ee where original == 1 do 
  { set ee constraint 1; set ee.vertex constraint 1;};
  rhs2 := vertex[2].z;
  foreach edge ee where original == 2 do 
  { set ee constraint 2; set ee.vertex constraint 2;};
  rhs3 := -sqrt(3)*vertex[3].x - vertex[3].y;
  foreach edge ee where original == 3 do 
  { set ee constraint 3; set ee.vertex constraint 3; };
  rhs4 := vertex[4].y;
  foreach edge ee where original == 4 do 
  { set ee constraint 4;  set ee.vertex constraint 4; };
  rhs5 := vertex[5].z;
  foreach edge ee where original == 5 do 
  { set ee constraint 5;  set ee.vertex constraint 5; };
  rhs6 := rhs3;
  foreach edge ee where original == 6 do 
  { set ee constraint 6; set ee.vertex constraint 6; };

}


// Handy transformations of TMPS

showwprism := { transform_expr "baca"; show_trans "R"; }
showgprism := { transform_expr "eada"; show_trans "R"; }

showlayer := {
 transform_expr "adacada"; show_trans "R";;
}


setcolor := { set facet backcolor yellow }

gogo := { gg; adj; frame; hessian; hessian; show_trans "R"; }

/* Commands:
   gogo - typical evolution
   showlayer - shows one plane layer
   showgprism - show one graphite labyrinth hexagonal prism
   showwprism - show one wurtzite labyrinth hexagonal prism
   transforms off - show just single fundamental region
   setcolor - to color one side yellow, as in my web page.
   To turn off showing all the edges in the graphics display,
      hit the "e" key in the graphics window.
*/